PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 425aa    MW: 48595.5 Da    PI: 5.7661
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109197.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.3e-35161072102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+ ++ ++sws ng sfvv++++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll++
  XP_010109197.1  16 FLLKTYELVDDQMTDPIVSWSPNGCSFVVWNPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLRN 101
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010109197.1 102 IHRRKP 107
                     ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEGSQGSSSS SAPAPFLLKT YELVDDQMTD PIVSWSPNGC SFVVWNPTEF AKDLLPMYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFANEE FIRGQRHLLR NIHRRKPVHS HSSNNQGQSA  120
VPLTDTERHE YEKEIKALKH DKNSLHSELQ RHERERQEFD LQIQLLHERF QNIEHRQKQL  180
TVYLAELVQK PGLASILLQE SEMHNKKRRL LSSSHFCDES NLEESWDLKL KRTSIEKLSS  240
NILKMDHIEK LEGSVEFWES FLYGIGDEFI DMGAFSQASP IVITEIEDAE MKCRSSSPMS  300
HLSSPHTFDV HSPPDVPCPD AIFFACLHND VAPKSSVIDM NSSPTGAPEA KASKEQDVGL  360
KVVVPAKVND LFWEQCLTET PGSSDMNNED KVSSDGKTGL HRKDWWNMNN VDNLTTQMGH  420
LTPAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25310517129Heat shock factor protein 1
5d5v_B3e-25310517129Heat shock factor protein 1
5d5v_D3e-25310517129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109197.10.0Heat stress transcription factor A-4b
TrEMBLW9SQV30.0W9SQV3_9R
STRINGPOPTR_0014s13780.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.19e-83heat shock transcription factor A4A